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  1. FHIR Specification Feedback
  2. FHIR-24863

Add deprecation labels to genomic related profiles, extensions and examples

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    • Icon: Change Request Change Request
    • Resolution: Not Persuasive
    • Icon: Medium Medium
    • FHIR Core (FHIR)
    • STU3
    • Orders & Observations
    • DiagnosticReport
      Observation
      ServiceRequest (Diagnostic/Procedure/ReferralRequest)
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      Since we are past R3, this change is not needed. 

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      Since we are past R3, this change is not needed. 
    • Elliot Silver / David Barwin : 6 - 0 - 3

    Description

      All genomic related materials in R4 are now deprecated as the CG IG is about to be release (planned release date 4. Oct.).

      As discussed during the WGM in Atlanta the Genomics WG identified missing deprecated labels on genomic related Examples and Extensions as these are replaced by the CG IG. For the MolecularSequence Resource a header was already introduced (same for the Genomics Implementation Guidance: https://www.hl7.org/fhir/genomics.html ).

      We'd like to have a label with the Text:

      Deprecation note:
      The material on this page is deprecated and being replaced by the Genomics Reporting Implementation Guide.

      on the following pages:
      https://www.hl7.org/fhir/observation-examples.html#10.1.7.4
      https://www.hl7.org/fhir/observation-example-genetics-1.html
      https://www.hl7.org/fhir/observation-example-genetics-2.html
      https://www.hl7.org/fhir/observation-example-genetics-4.html
      https://www.hl7.org/fhir/observation-example-genetics-5.html
      https://www.hl7.org/fhir/observation-example-diplotype1.html
      https://www.hl7.org/fhir/observation-example-haplotype1.html
      https://www.hl7.org/fhir/observation-example-haplotype2.html
      https://www.hl7.org/fhir/observation-example-phenotype.html
      https://www.hl7.org/fhir/observation-example-TPMT-diplotype.html
      https://www.hl7.org/fhir/observation-example-TPMT-haplotype-one.html
      https://www.hl7.org/fhir/observation-example-TPMT-haplotype-two.html

      Patrick Werner: https://www.hl7.org/fhir/hlaresult.html

      Profile:
      https://www.hl7.org/fhir/observation-genetics.html

      Extension:
      https://www.hl7.org/fhir/extension-observation-geneticsallele.html
      https://www.hl7.org/fhir/extension-observation-geneticsaminoacidchange.html
      https://www.hl7.org/fhir/extension-observation-geneticsancestry.html
      https://www.hl7.org/fhir/extension-observation-geneticscopynumberevent.html
      https://www.hl7.org/fhir/extension-observation-geneticsdnaregionname.html
      https://www.hl7.org/fhir/extension-observation-geneticsgene.html
      https://www.hl7.org/fhir/extension-observation-geneticsgenomicsourceclass.html
      https://www.hl7.org/fhir/extension-observation-geneticsinterpretation.html
      https://www.hl7.org/fhir/extension-observation-geneticsphaseset.html
      https://www.hl7.org/fhir/extension-observation-geneticsvariant.html
      https://www.hl7.org/fhir/extension-servicerequest-geneticsitem.html
      https://www.hl7.org/fhir/extension-diagnosticreport-geneticsanalysis.html
      https://www.hl7.org/fhir/extension-diagnosticreport-geneticsassessedcondition.html
      https://www.hl7.org/fhir/extension-diagnosticreport-geneticsfamilymemberhistory.html
      https://www.hl7.org/fhir/extension-diagnosticreport-geneticsreferences.html
      https://www.hl7.org/fhir/extension-observation-geneticsinterpretation.html

      This example:
      https://www.hl7.org/fhir/observation-example-genetics-3.html
      should be deleted as it is not compliant to the usage notes. This example is just bad practice (e.g. no value, textual value in note..) and shouldn't be there.

      It would be really nice to have this included into the R4 technical corrections, and CI build.

      Zulip thread: https://chat.fhir.org/#narrow/stream/179256-Orders-and.20Observation.20WG/topic/deprecated.20Examples.20and.20Extensions

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            patrick-werner Patrick Werner
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              Updated:
              Resolved: