Uploaded image for project: 'FHIR Specification Feedback'
  1. FHIR Specification Feedback
  2. FHIR-19373

Consider support for sending VCF data in Sequence

    XMLWordPrintableJSON

Details

    • Icon: Change Request Change Request
    • Resolution: Duplicate
    • Icon: Medium Medium
    • Genomics Reporting (FHIR)
    • STU3
    • Clinical Genomics
    • MolecularSequence [deprecated]
    • Enhancement

    Description

      Recent discussions have pushed us to have basic support for sending VCF files. Currently possible via Sequence.repository.url (eg, pointing to a separate Binary resource), but a bit awkward semantically (sequence calling may not have taken place yet, must specify Sequence.coordinateSystem). Other options through Observation and DiagnosticReport are similiarly awkward with the methods provided.

      I recommend we change the semantics to better show this is a current capability and/or add a separate element to directly support this.

      Zulip chat topic: https://chat.fhir.org/#narrow/stream/43-genomics/topic/attaching.20genomic.20files

      Attachments

        Activity

          People

            Unassigned Unassigned
            gil Gil Alterovitz
            Watchers:
            3 Start watching this issue

            Dates

              Created:
              Updated:
              Resolved: